• Ding, X.D., Zhang, Q., Simianer, H. (2009) Haplotype Reconstruction and Estimation of Haplotype Frequencies from Nuclear Families with One Parent Available and Varying Numbers of Children Using the Exact Likelihood. HUM HERED, 67: 174-175.
• Köhn, F., Sharifi, A.R., Simianer, H. (2009): Genetic analysis of reactivity to humans in Goettingen minipigs. Applied Anim. Beha. Sci. 120: 68–75.
• König, S., H. Simianer, A. Willam (2009). Economic evaluation of genomic breeding programs. J. Dairy Sci., 92: 382–391.
• König, S., Swalve, H. (2009). application of selection index calculations to determine selection strategies in genomic breeding programs. J. Dairy Sci., 92: 5292–5303.
• Maxa J, Borchers N, Thomsen H, Simianer H, Gauly M, Sharifi AR (2009). Auction price of Texel, Suffolk and German white-headed mutton rams: A genetic-statistical study. Small Ruminant Res., doi:10.1016/j.smallrumres.2009.07.011
• Maxa, J., A. R. Sharifi, J. Pedersen, M. Gauly, H. Simianer and E. Norberg (2009). Genetic parameters and factors influencing survival to 24 hours after birth in Danish meat sheep breeds. J. of Anim. Sci., 87: 1888-1895.
• Molaee,V., Osfoori, R., Eskandari Nasab, M.P., Qanbari, S. (2009): Genetic relationships among six Iranian indigenous sheep populations based on microsatellite analysis. Small Ruminant Research, 84: 121–124.
• Niemann, B., König,s., Bruns,E. (2009). Maximaler Zuchtfortschritt bei begrenztem Inzuchtzuwachs im Programm Hannoveraner Springpferdezucht. Züchtungskunde, 81: 51–56.
• Pashmi M, Qanbari S,Ghorashi SA, Sharifi AR, Simianer H (2008) Analysis of Relationship between Bovine Lymphocyte Antigen DRB3.2 Alleles, Somatic Cell Count and milk Traits in Iranian Holstein Population. J ANIM BREED GENET, 126: 296-303.
• Pimentel E C G, König S, Schenkel F S, Simianer H (2009) Comparison of statistical procedures for estimating polygenic effects using dense genome-wide marker data. BMC Proceedings, 3: 12-16.
• Schierenbeck S, König S, Simianer H (2009) Genetic and environmental impact on auction prices for Holstein cows. LIVEST SCI, 121: 327-334.
• Simianer, H, Pimentel E C G (2009) Robust QTL fine mapping by applying a quantitative transmission disequilibrium test to the Mendelian sampling term. J. Anim. Breed. Genet. ISSN 0931-2668
• Tsousis G, Sharifi AR, Hoedemaker M (2009) Increased Risk of Conception Failure in German Holstein Friesian Cows with Chronic Endometritis. Reproduction in Domestic Animals, Blackwell Verlag GmbH.
• Tsousis G, Sharifi AR, Hoedemaker M (2009) Associations between the clinical signs of chronic endometritis with ovarian cysts and body condition loss in German Holstein Friesian cows. J. Vet. Sci., 10: 337-341.
• Zander KK, Drucker AG, Holm-Müller K, Simianer H (2009) Choosing the cargo for Noah's Ark Applying Weitzman's approach to Borana cattle in East Africa. ECOL ECON, doi: 10.1016/j.ecolecon.2009.01.011.